PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Home  BLAST  Prediction  RegMap  ATRM  Download  Help  About  Links
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008295-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TCP
Protein Properties Length: 353aa    MW: 38942.9 Da    PI: 9.0285
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008295-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP78.71.6e-243097366
               TCP  3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....s 66
                      +k+ +++++hTkv+g +RRv ++   a r+F+L+   G+++d++ti+WLl++ kpai ++t t    +
  PSME_00008295-RA 30 VKRPSTKDRHTKVNGQGRRVKIPTASAVRIFQLTHGFGHKSDGETIQWLLNKVKPAIMAATCTcvvpT 97
                      6999*********************************************************9944440 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-193492IPR005333Transcription factor, TCP
PROSITE profilePS5136918.7793589IPR017887Transcription factor TCP subgroup
SMARTSM004144.9E-7264351IPR002119Histone H2A
Gene3DG3DSA:1.10.20.105.1E-24281346IPR009072Histone-fold
SuperFamilySSF471135.59E-20282345IPR009072Histone-fold
PfamPF001253.7E-8285345IPR007125Histone H2A/H2B/H3
PRINTSPR006201.7E-14300315IPR002119Histone H2A
PRINTSPR006201.7E-14315328IPR002119Histone H2A
PRINTSPR006201.7E-14329343IPR002119Histone H2A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSSEVQHQSK ERLLLEGPRS NDPTRNALVV KRPSTKDRHT KVNGQGRRVK IPTASAVRIF  60
QLTHGFGHKS DGETIQWLLN KVKPAIMAAT CTCVVPTLSF SIIGSGTGTV PTLPVSILGS  120
DLDIDKDLVA SLAGEMFVSE LATVAEKKII IDQEKRNKEE EELEDNIFYL VAEKRDISSL  180
LRSAMREKEG AEKGFKELPK SNGENQIDSP QSNGTILDVA ERGLQNTWIG IQASALGNIM  240
KTPRLEIAEL RRTLETLRAA LLGAKLEWHD KFQGFYVLPS DFLVGPIHHL LKSRVSASGR  300
VGATVAIYSV AILEYLIVEV LELAGNANKD IKVKRITPRH LQLALEEMKS LIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1f66_C2e-2628235228101HISTONE H2A.Z
1f66_G2e-2628235228101HISTONE H2A.Z
3wa9_C2e-2628235231104Histone H2A.Z
3wa9_G2e-2628235231104Histone H2A.Z
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1041275e-85BT104127.1 Picea glauca clone GQ02806_M01 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.16e-27TCP family protein